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      <li><a href="#index_a"><span>a</span></a></li>
      <li><a href="#index_c"><span>c</span></a></li>
      <li><a href="#index_d"><span>d</span></a></li>
      <li><a href="#index_e"><span>e</span></a></li>
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      <li><a href="#index_m"><span>m</span></a></li>
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&nbsp;

<h3><a class="anchor" id="index_a">- a -</a></h3><ul>
<li>addDNA()
: <a class="el" href="classCell.html#a7d39f98796a73ac263a52550c99a15d8">Cell</a>
</li>
<li>addFactor()
: <a class="el" href="classTerm.html#a3621f14b25f02b6353d7754f61a376da">Term</a>
</li>
<li>addInteraction()
: <a class="el" href="classCell.html#a62f2f6b4de9c76c6ead913b783fd8535">Cell</a>
</li>
<li>addMRNA()
: <a class="el" href="classCell.html#a51517080a4d784c1b825dd7bbe520368">Cell</a>
</li>
<li>addProtein()
: <a class="el" href="classCell.html#a6676a497230bcc7664b9ffd245c395b4">Cell</a>
</li>
</ul>


<h3><a class="anchor" id="index_c">- c -</a></h3><ul>
<li>Cell()
: <a class="el" href="classCell.html#a394510643e8664cf12b5efaf5cb99f71">Cell</a>
</li>
</ul>


<h3><a class="anchor" id="index_d">- d -</a></h3><ul>
<li>degRateChange()
: <a class="el" href="classCell.html#acec681969db4cc0fb80021a5613d8e8c">Cell</a>
</li>
<li>DNA()
: <a class="el" href="classDNA.html#a3bad49a2b4f2afcc3a55f1d663e2d14e">DNA</a>
</li>
</ul>


<h3><a class="anchor" id="index_e">- e -</a></h3><ul>
<li>Experiment()
: <a class="el" href="classExperiment.html#a303e6a05d99f403ff4793495a2fbff58">Experiment</a>
</li>
</ul>


<h3><a class="anchor" id="index_f">- f -</a></h3><ul>
<li>fwdRateChange()
: <a class="el" href="classCell.html#a2d93a1672e574f231c86d86067b31f74">Cell</a>
</li>
</ul>


<h3><a class="anchor" id="index_g">- g -</a></h3><ul>
<li>getCellID()
: <a class="el" href="classCell.html#a7b4cbc6fed25a9a8d5d4c5a60fe85590">Cell</a>
</li>
<li>getConcentration()
: <a class="el" href="classMolecule.html#a6187f526e73813139b4611a576086a0c">Molecule</a>
</li>
<li>getInitialConcentration()
: <a class="el" href="classMolecule.html#a37c63ca213548e683a45759b36cd944a">Molecule</a>
</li>
<li>getMoleculeID()
: <a class="el" href="classMolecule.html#ad163d9cd82cf080bc1e08270d748f3f6">Molecule</a>
</li>
<li>getPostTransModCount()
: <a class="el" href="classProtein.html#ae8a1d9a9646b4c8e9f5b84d6c1633183">Protein</a>
</li>
<li>getProductFactor()
: <a class="el" href="classInteraction.html#a4c0b8dcc4dc6aad1fa4ab4e3c259d356">Interaction</a>
</li>
<li>getRate()
: <a class="el" href="classInteraction.html#a72ad22597c72a30886340428c6e2296a">Interaction</a>
</li>
<li>getScore()
: <a class="el" href="classCell.html#a1b9ffd156292e2412d44e2b0ea43c835">Cell</a>
</li>
<li>getSubstrateFactor()
: <a class="el" href="classInteraction.html#ad4013e291ae5b398a75abfa0f06d7ee2">Interaction</a>
</li>
<li>getTerm()
: <a class="el" href="classInteraction.html#a10c1bb21b2d7b9715b76e69683f0422a">Interaction</a>
</li>
<li>getValue()
: <a class="el" href="classTerm.html#afef47352ce8e61eaef764cbfcb23c6e7">Term</a>
</li>
</ul>


<h3><a class="anchor" id="index_h">- h -</a></h3><ul>
<li>histoneMod()
: <a class="el" href="classCell.html#af8333316f26868a1f1cad1291c8770f4">Cell</a>
</li>
</ul>


<h3><a class="anchor" id="index_i">- i -</a></h3><ul>
<li>Interaction()
: <a class="el" href="classInteraction.html#ad3f1ea185514a033eb0fb8a39e5b20ac">Interaction</a>
</li>
<li>isComplexed()
: <a class="el" href="classCell.html#a3184d63ac9ee1e4cb60b9fd38c870bf0">Cell</a>
</li>
</ul>


<h3><a class="anchor" id="index_m">- m -</a></h3><ul>
<li>Molecule()
: <a class="el" href="classMolecule.html#a7e7d290ae641518ad4c4d5303b519d0f">Molecule</a>
</li>
<li>MRNA()
: <a class="el" href="classMRNA.html#a060c2674e41b710fda9b7269d4a8c136">MRNA</a>
</li>
</ul>


<h3><a class="anchor" id="index_n">- n -</a></h3><ul>
<li>newBasic()
: <a class="el" href="classCell.html#a8ec1b55132525da1ae7bf7f05b9e4893">Cell</a>
</li>
<li>newComplex()
: <a class="el" href="classCell.html#ad316c047bcd04f6b4f0a3fe6cf3f2eaf">Cell</a>
</li>
<li>newPostTransMod()
: <a class="el" href="classCell.html#ac0159abe04ce33e168782e646a4424e3">Cell</a>
</li>
<li>newPromoter()
: <a class="el" href="classCell.html#a97385b8986611c19ff9f97597a33a6ff">Cell</a>
</li>
<li>nextGeneration()
: <a class="el" href="classCell.html#a21d548d458486cb101c787ff34595848">Cell</a>
</li>
</ul>


<h3><a class="anchor" id="index_p">- p -</a></h3><ul>
<li>Protein()
: <a class="el" href="classProtein.html#a4610c6369d2f7e4bd31481d53e5001a1">Protein</a>
</li>
</ul>


<h3><a class="anchor" id="index_r">- r -</a></h3><ul>
<li>revRateChange()
: <a class="el" href="classCell.html#a3a80841a57d54309973dc947427f91f6">Cell</a>
</li>
<li>rungeKuttaEvaluate()
: <a class="el" href="classCell.html#ac165ee3b5920d5b4ac200ae6b016cea8">Cell</a>
</li>
</ul>


<h3><a class="anchor" id="index_s">- s -</a></h3><ul>
<li>setFactor()
: <a class="el" href="classTerm.html#af7c2b10a55a3ea5f0dc6722ce661d272">Term</a>
</li>
<li>setProductFactor()
: <a class="el" href="classInteraction.html#a66e854b9bba18effba89d9d7c5d51988">Interaction</a>
</li>
<li>setRate()
: <a class="el" href="classInteraction.html#acebf4b377a861554c969843035e5ed17">Interaction</a>
</li>
<li>start()
: <a class="el" href="classExperiment.html#ab15fca04be9b7bcad65b264b23b4a499">Experiment</a>
</li>
</ul>


<h3><a class="anchor" id="index_t">- t -</a></h3><ul>
<li>Term()
: <a class="el" href="classTerm.html#a6943005db5b7e5ca84afcb54a5862d42">Term</a>
</li>
</ul>


<h3><a class="anchor" id="index_0x7e">- ~ -</a></h3><ul>
<li>~Cell()
: <a class="el" href="classCell.html#a9fa559f7a28e2b4336c6879ca09304d8">Cell</a>
</li>
<li>~DNA()
: <a class="el" href="classDNA.html#ae839223a414026e083f5ba7491979e78">DNA</a>
</li>
<li>~Experiment()
: <a class="el" href="classExperiment.html#a96058d848040e45948bbb60623711da6">Experiment</a>
</li>
<li>~Interaction()
: <a class="el" href="classInteraction.html#a6610199fedc7fae617003cb2f397c825">Interaction</a>
</li>
<li>~Molecule()
: <a class="el" href="classMolecule.html#a1ff980b574a62526abff3d631c83bf94">Molecule</a>
</li>
<li>~MRNA()
: <a class="el" href="classMRNA.html#ae98d988197e1f9b398440e15bb80b37e">MRNA</a>
</li>
<li>~Protein()
: <a class="el" href="classProtein.html#a86b3ed374eead087b00d556915a584f6">Protein</a>
</li>
<li>~Term()
: <a class="el" href="classTerm.html#af684aafab11ec6442aed0866b4973afc">Term</a>
</li>
</ul>
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